
Why are orange cats orange? A small missing piece of DNA is why, 2 new studies explain
Why are orange cats orange? A small missing piece of DNA is why, 2 new studies explain The type of DNA mutation responsible for orange cat coloration is "very unusual," Stanford University genetic professor Gregory Barsh said.
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This cat's owner always dreamed of throwing a big party for her soul cat, Holly. Now, her Quinceañera gripped the hearts of social media users.
Orange cats may be known for their silly behavior, but two new studies are a step closer to understanding "the why" behind the furry felines' coloring.
Two independent studies published on May 15 by geneticists in Japan and from Stanford University in California explain how orange cats' coloring is a direct result of a missing DNA code near a specific protein found within the X chromosome. Inherently, the studies also explain why most orange cats, about 80%, are male.
So, to answer the question: What makes orange cats orange? Here's a deeper look into the findings of the two studies.
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Why are orange cats orange? Here's what researchers found
Both studies found that a small missing piece of DNA code located next to the Rho GTPase-activating protein (ARHGAP36) resulted in orange fur coloration. In cats, ARHGAP36 is responsible for fur coloration.
When this piece of DNA is missing, it causes ARHGAP36 to become more abundant, roughly 10 times more abundant, Gregory Barsh, Stanford University genetics professor and study co-author, told USA TODAY. This leads to the production of more red, orange or yellow pigment, which is incorporated into a cat's hair.
This type of mutation is "very unusual," according to Barsh.
"Most mutations ... like genetic conditions in humans ... (are) inactivate or take away the function of a gene," Barsh said. "But what this does is really different. It increases the expression of this gene ARHGAP36, and moreover, it does it in a specific type of cell, the pigment cell ... that is found in hair, eye and skin color."
So why does this happen? Why does an increased amount of ARHGAP36 result in orange fur?
"It's interfering with a central signaling pathway, a hormonal signaling pathway that's present in many, many cells of the body ... basically all animals," Barsh said. "That is a hormonal signaling pathway that ... normally produces black or brown pigment. What increased expression of a ARHGAP36 does it is destroys that signaling pathway, or it inhibits that signaling pathway. So instead, the melanocytes (cells that form melanin) make red or yellow pigment."
Studies point to why orange cats are mostly males
Most orange cats are male, about 80%, to be more exact, according to the Regional Animal Protection Society. And the findings from the recent studies make sense of why.
ARHGAP36 is found within the X chromosome. Females have two X chromosomes, and males have an X chromosome and a Y chromosome. For the mutation to appear in female cats, it would need to occur in both X chromosomes, which has a lesser chance of occurring than in a male's one X chromosome.
Watch: Fabulous feline stories on International Cat Day
What do these findings mean?
Learning about the ARHGAP36 mutation goes beyond just understanding cats.
The gene is found in all animals, including humans, Barsh said. Learning how it functions allows researchers to better understand hormonal signaling pathways as a general phenomenon.
'No cats in the lab'
As cat lovers, Barsh said he and his research team worked with volunteers and nonprofit organizations to collect the samples necessary for their study.
First, the team worked with cat owners to obtain voluntary samples. Barsh said the study's lead author, Stanford University genetics professor Christopher Kaelin, went to several cat shows and asked owners if he could swab their cats' cheeks for samples.
The team also partnered with spay and neuter clinics to study tissue samples. In some cases, when a female cat is neutered, she is already pregnant, Barsh said, adding that the fetal tissue, or the embryonic tissue, gets discarded. When partnering with clinics, Barsh and his team collected these tissue samples instead to use for their study.
While the two studies were completed independently, Barsh said the researchers have been in contact with each other for the last year and decided to publish in the same peer-reviewed journal, "Current Biology," on the same day.
Greta Cross is a national trending reporter at USA TODAY. Story idea? Email her at gcross@usatoday.com.

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USA Today
2 days ago
- USA Today
The Big One: Is California 'overdue' for a devastating major earthquake?
The Big One: Is California 'overdue' for a devastating major earthquake? A near-certain disaster looms for California, but there are real things people can do to prepare. Here's what to know about the risks. Show Caption Hide Caption California governor signs emergency declaration after quake California's governor says "we're concerned about damage" from magnitude 7 earthquake." It's the unavoidable series of questions Christine Goulet gets every time she's asked what she does for a living. "When is the next big earthquake coming? Do you know where? When should we get ready?" Goulet, director of the U.S. Geological Survey's Earthquake Science Center in Los Angeles, told USA TODAY. "It's almost without fail once they know I study earthquakes. If I received a dollar every time I'm asked, I'd be rich." Goulet has answers, but she can't predict the future. The ominous truth: The Big One could happen any time, and there's more than one possible "Big One." "It's gonna happen. An earthquake could be in a matter of minutes, the next hour, tomorrow, or in a week from now, we can't predict that precisely at this time. We don't know," Goulet said. "But the point in general is we want and need to prepare for them." 'Swaying back and forth': Magnitude 7 earthquake, aftershocks rock California The most authoritative research on the risk to California was conducted in 2015, but little has changed in the past decade. The state will almost certainly face a magnitude 6.7 or larger earthquake within the next three decades, the USGS concludes. Some of the most at-risk locations are San Francisco and Los Angeles. California's continuous temblor risk coincides with a huge earthquake brewing along the Cascadia Subduction Zone off the coast of the Pacific Northwest. San Francisco Bay Area faces high chances of getting a Big One With nearly four dozen faults in the region stretching from Napa to Monterey, the San Francisco Bay Area has a 72% chance of a major quake registering 6.7 magnitude or higher by 2043, USGS researchers previously estimated. The findings also indicate that the Bay Area has a 51% chance of experiencing an earthquake with a magnitude of 7 and a 20% chance of measuring a magnitude of 7.5 or higher within that time frame. "The earthquake threat is very real," said Richard Allen, a professor at the University of California, Berkeley and the director of the Berkeley Seismology Lab. "It is a real challenge as we have to take that long-term view, but also not to live our lives in fear." In December, thousands in the Bay Area and across Northern California were worried after a magnitude 7 earthquake struck along a sparsely populated northern coast of California, triggering a tsunami warning across a swath of the West Coast stretching from southern Oregon to San Francisco. Traci Grant, 53, a public relations specialist who felt the quake in San Francisco, told USA TODAY at the time she felt her retrofitted apartment move in slow motion. "It just kept going and going," Grant said. "It was scary and a bit exciting at the same time. It was more of a roll than just shake, shake, shake." Fragile environment: A collapsing glacier destroyed a Swiss village. Is climate change to blame? Less than two hours after the initial quake, some areas experienced 13 different aftershocks, ranging from 5.1 to 3.1, the USGS reported. Two hours after that, at least 39 aftershocks of at least a 2.5 magnitude occured in the region, authorities said. No earthquake-related injuries or major damages were reported. Goulet said if the quake had been directly on land, "the impact would've been more devastating." Goulet said December's quake magnitude conjured up the Great San Francisco Earthquake and Fire of 1906. It was a nearly minute-long 7.9 magnitude quake followed by a fire that burned for three days, destroying thousands of buildings. The San Francisco quake killed an estimated 3,000 people and destroyed roughly 80% of the city. It is known as one of the deadliest in U.S. history. Allen also noted the 1868 Hayward Fault earthquake that struck the heart of the Bay Area and killed 30 people. With all the Bay Area faults, Allen said his research shows there's a "two-in-three chance" the Big One could be soon. "We're overdue for a recurrence," Allen said. The last major earthquake in the Bay Area occurred more than a decade ago, when an earthquake rattled Napa Valley in 2014. The 6.0 magnitude quake in Wine Country killed one person and injured 300 people. The incident caused more than $1 billion in damage across Napa and neighboring cities, including Vallejo, California, which took years to rebuild. Then there was the Loma Prieta earthquake that rocked the San Francisco Bay Area in 1989, killing 63 people and injuring nearly 3,800 others. The earthquake disrupted the World Series and damaged the Bay Bridge, Oakland's Cypress Freeway, and swaths of San Francisco. It caused up to $10 billion in damage. "There's this perception that large quakes are frequent, but actually, they are quite rare," Goulet said. "We just don't know when they will happen." Los Angeles is ripe for a Big One as well The Los Angeles area also stands a chance of getting a major earthquake, as there's a 60% chance of a 6.7 magnitude quake within the next 30 years, the USGS said. Additionally, there is also a 46% probability that a 7.0 magnitude earthquake will hit L.A. and a 31% chance a 7.5 magnitude quake will strike during that same period. Allen, the Berkeley seismologist, said Southern California has just as high an earthquake risk compared to its Northern California counterparts. "They face a similar threat, if not higher," Allen said. Goulet added that with Los Angeles and the surrounding areas being so populous (nearly 18.6 million residents according to California Finance Department statistics), there is a high probability for major destruction. She cites the disastrous 6.7 earthquake in Northridge, California, in 1994, which killed 60 people and injured more than 7,000. The devastation also left thousands of buildings and structures collapsed or damaged across Los Angeles, Ventura, Orange and San Bernardino counties. Thousands of residents became homeless as the aftermath caused between $13 billion to $20 billion in damages. "The closer an earthquake is to a large population, the greater the impact will be," Goulet said. Goulet also points to a sequence of earthquakes in 2019 in Ridgecrest, California. A 7.1 magnitude earthquake rattled the city two days after an initial 6.4 magnitude quake. Goulet was among a USGS on-site team researching the first quake when, surprisingly, the second temblor struck. "It was terrifying," Goulet said. "We were there taking measurements and just as we were finishing our work and planning for the next day, the second one occurred about six miles away from us. That was extremely close." Goulet said she remembers reassuring panicked residents that everything would be okay. "That's why we cannot specifically predict earthquakes, when and where they will occur and how big they will be," Goulet added. "But what we can do is collect all of the research that causes earthquakes and the probabilities, which are called probabilistic seismic hazard analysis." Now what?: Federal database that tracked costly weather disasters no longer being updated How to prepare for an earthquake disaster Huge earthquakes have long been an existential crisis for millions along the West Coast, as described in a 2022 USA TODAY article. But experts said there are real things people can do to help them prepare for a major disaster. If you experience an earthquake, Sarah Minson, a research geophysicist with the USGS's Earthquake Science Center in Mountain View, California, advises not to run. "If you feel shaking, you should drop, cover and hold on to protect yourself," Minson said. "Don't go anywhere. Don't run outside. A huge number of the injuries that occur in earthquakes are people stepping on broken glass or trying to run during the shaking and falling down." Allen, the Berkeley seismologist, recommends that households create an earthquake plan, including where they will meet and possibly have a bag or suitcase ready for at least a couple of days. Residents will at least want a flashlight and a way to charge their phone. They should also be prepared to have access to electricity or water cut off for days or weeks. Here are a few practical tips: When trying to use your phone, text – don't call. In a disaster, text messages are more reliable and strain cell networks less. To power your phone, you can cheaply buy a combination weather radio, flashlight and hand-crank charger to keep your cell running even without power for days. A cash reserve is good to have, USGS seismologist Lucy Jones previously said. You'll want to be able to buy things, even if your credit card doesn't work for a time. Simple things like securing bookshelves can save lives. Downloading an early warning app can give you precious moments to protect yourself in the event of a big quake. Buying earthquake insurance can protect homeowners. And taking part in a yearly drill can help remind you about other easy steps you can take to prepare. Contributing: Elizabeth Wiese and Joel Shannon


Politico
3 days ago
- Politico
AI, the disruptor-in-chief
FORWARD THINKING Artificial intelligence is upending how industries function and it's coming for scientific research next. Rene Caissie, an adjunct professor at Stanford University, wants AI to conduct research. In 2021, he started a company, that lets public health departments, researchers and life sciences companies pose research questions and receive answers immediately. And, unlike many AI systems, Caissie told Ruth, the AI explains those answers by showing the data its results are based on. 'It used to be hard to do research,' he said, explaining that it takes a lot of time for researchers to get access to and organize data in order to answer basic scientific questions. Manual data analysis can also take months. The company is now partnering with HealthVerity, a provider of real-world health data, to build up its data sources. In turn, HealthVerity will offer Medeloop's research platform to its clients. The company has worked with the Food and Drug Administration, the National Institutes of Health, and the Centers for Disease Control and Prevention in the past. Caissie says the New York City Department of Health and Mental Hygiene is already using Medeloop's AI to run public health analyses. Why it matters: Public health departments receive huge amounts of data on human health from a variety of sources. But prepping that information and analyzing it can be onerous. Having access to a research platform like Medeloop could give public health departments and academic medical centers much faster insight into trends and in turn enable them to respond more quickly. How it works: Medeloop's AI is designed to think like a researcher. In a demo, Medeloop strategist John Ayers asked the bot how many people received a first-time autism diagnosis, broken down by age, race and sex, and what trends were visible with that data. He wanted the AI to only include people who had had interactions with a doctor for at least two years prior to diagnosis. The platform returned a refined query to improve results and a suggestion for what medical codes to use to identify the right patients for inclusion in the study. It delivered a trial design that looked at a cohort of 799,560 patients with new autism diagnoses between January 2015 and December 2024. Medeloop's AI showed that 70 percent of new autism diagnoses were for males. A monthly trends report found that, outside of a dip during the Covid-19 pandemic, new autism diagnoses have been on the rise, particularly among 5-11 year olds since 2019. Though Medeloop doesn't determine the cause of autism, the ease with which users can obtain answers could help speed up the pace of research. One of the platform's key innovations is its use of a federated network of data. Medeloop's new deal with HealthVerity will raise the platform's de-identified and secure patient records to 200 million. Notably, the data never leaves the health system, which increases security. Instead, Medeloop sends its AI to wherever the data is stored, analyzes it there and then returns the results to the platform. WELCOME TO FUTURE PULSE This is where we explore the ideas and innovators shaping health care. Scientists are making cover art and figures for research papers using artificial intelligence. Now illustrators are calling them out, Nature's Kamal Nahas reports. Share any thoughts, news, tips and feedback with Danny Nguyen at dnguyen@ Carmen Paun at cpaun@ Ruth Reader at rreader@ or Erin Schumaker at eschumaker@ Want to share a tip securely? Message us on Signal: Dannyn516.70, CarmenP.82, RuthReader.02 or ErinSchumaker.01. TECH MAZE Large language models like ChatGPT and Claude generate inferior mental health care treatment when presented with data about a patient's race, according to a study published this week in npj Digital Medicine. The findings: Researchers from Cedars-Sinai, Stanford University and the Jonathan Jaques Children's Cancer Institute tested how artificial intelligence would produce diagnoses for psychiatric patient cases under three conditions: race neutral, race implied and race explicitly stated using four models. They included the commercially available large language models ChatGPT, Claude and Gemini, as well as NewMes-15, a local model that can run on personal devices without cloud services. The researchers then asked clinical and social psychologists to evaluate the findings for bias. Most LLMs recommended dramatically different treatments for African American patients compared with others, even when they had the same psychiatric disorder and patient profile outside of race. The LLMs also proposed inferior treatments when they were made aware of a patient's race, either explicitly or implicitly. The biases likely come from the way LLMs are trained, the researchers wrote, and it's unclear how developers can mitigate those biases because 'traditional bias mitigation strategies that are standard practice, such as adversarial training, explainable AI methods, data augmentation and resampling may not be enough,' the researchers wrote. Why it matters: The study is one of the first evaluations of racial bias on psychiatric diagnoses across multiple LLMs. It comes as people increasingly turn to chatbots like ChatGPT for mental health advice and medical diagnoses. The results underscore the nascent technology's flaws. What's next: The study was small — only 10 cases were examined — which might not fully capture the consistency or extent of bias. The authors suggest that future studies could focus on a single condition with more cases for deeper analysis.

Business Insider
3 days ago
- Business Insider
Forget 'biological age' tests — longevity experts are using an $800 under-the-radar blood test to measure aging in real-time
Doctors and scientists are using a blood plasma test to study longevity. The test measures proteins and can tell you about your organ health. This field of proteomics could one day help detect diseases like cancer before they start. Should you have that second cup of coffee? How about a little wine with dinner? And, is yogurt really your superfood? Scientists are getting closer to offering consumers a blood test that could help people make daily decisions about how to eat, drink, and sleep that are more perfectly tailored to their unique biology. The forthcoming tests could also help shape what are arguably far more important health decisions, assessing whether your brain is aging too fast, if your kidneys are OK, or if that supplement or drug you're taking is actually doing any good. It's called an organ age test, more officially (and scientifically) known as "proteomics" — and it's the next hot " biological age" marker that researchers are arguing could be better than all the rest. "If I could just get one clock right now, I'd want to get that clock, and I'd like to see it clinically available in older adults," cardiologist Eric Topol, author of the recent bestseller "Super Agers: An Evidence-Based Approach to Longevity," told Business Insider. Topol said armed with organ age test results, people could become more proactive stewards of their own health, before it's too late. "When we have all these layers of data, it's a whole new day for preventing the disease," Topol said. "You see the relationship with women's hormones. You see the relationship with food and alcohol. You don't ever get that with genes." A test like this isn't available to consumers just yet, but it's already being used by researchers at elite universities and high-end longevity clinics. They hope it can become a tool any doctor could use to assess patient health in the next few years. A startup called Vero, which was spun out of some foundational proteomics research at Stanford University, is hoping to beta test a proteomics product for consumers this year. "Knowing your oldest organ isn't the point; changing the trajectory is," Vero co-founder and CEO Paul Coletta told a crowd gathered at the Near Future Summit in Malibu, California, last month. Coletta told Business Insider Vero's not interested in doing "wealthcare." The company plans to make its test available to consumers for around $200 a pop, at scale. Their draw only requires one vial of blood. Why measuring proteins could be the key to better personalized medicine The big promise of proteomics is that it could be a more precise real-time tool for tracking important but subtle changes that emerge inside each of us as we age. Genetic testing can measure how our bodies are built, spotting vulnerabilities in a person's DNA that might predispose them to health issues. Standard clinical measurements like a person's weight, blood pressure, or cholesterol readings are a useful proxy for potential health issues. Then there are the increasingly popular "biological age" tests available to consumers at home. Most of those look at "epigenetic changes" — how environmental factors affect our gene expression. Proteomics does something different and new. It measures the product that our bodies make based on all those genetic and environmental inputs: proteins. It offers a live assessment of how your body is running, not just how it's programmed. If validated in the next few years, these tests could become key in early disease detection and prevention. They could help influence all kinds of medical decisions, from big ones like "What drugs should I take?" to little ones like "How does my body respond to caffeine or alcohol?" Elite longevity clinics already use proteomics Some high-end longevity clinics are already forging ahead using proteomics to guide clinical recommendations, albeit cautiously. Dr. Evelyne Bischof, a longevity physician who treats patients worldwide, said she uses proteomic information to guide some of the lifestyle interventions she recommends to her patients. She may suggest a more polyphenol-rich diet to someone who seems to have high inflammation and neuroinflammation based on proteomic test results, or may even suggest they do a little more cognitive training, based on what proteomics says about how their brain is aging. Dr. Andrea Maier, a professor of medicine and functional aging at the National University of Singapore, told BI she uses this measurement all the time in her longevity clinics. For her, it's just a research tool, but if the results of her ongoing studies are decent, she hopes to be able to use it clinically in a few years' time. "We want to know what kind of 'ageotype' a person is, so what type of aging personality are you, not from a mental perspective, but from a physical perspective," Maier said. "It's really discovery at this moment in time, and at the edge of being clinically meaningful." "Once we have that validated tool, we will just add it to our routine testing and we can just tick the box and say, 'I also want to know if this person is a cardiac ager, or a brain ager, or a muscle ager' because now we have a sensitive parameter — protein — which can be added," Maier said. The two big-name proteomics tests are Olink and SOMAscan. For now, their high-end screening costs around $400-$800 per patient. "I'm losing lots of money at the moment because of proteomics for clinical research!" Maier said. Proteomics could soon help predict who's most likely to get certain cancers, fast-tracking both prevention and treatment Top aging researchers at Stanford and Harvard are pushing the field forward, racing to publish more novel insights about the human proteome. The latest findings from Harvard aging researcher Vadim Gladyshev's lab, published earlier this year, suggest that as we age, each person may even stand to benefit from a slightly different antiaging grocery list. To research this idea, Gladyshev looked at proteins in the blood of more than 50,000 people in the UK, all participants in the UK Biobank who are being regularly tested and studied to learn more about their long-term health. He tracked their daily habits and self-reported routines like diet, occupation, and prescriptions, comparing those details to how each patient's organs were aging. He discovered some surprising connections. Yogurt eating, generally speaking, tended to be associated with better intestinal aging but had relatively no benefit to the arteries. White wine drinking, on the other hand, seemed to potentially confer some small benefit to the arteries while wreaking havoc on the gut. "The main point is that people age in different ways in different organs, and therefore we need to find personalized interventions that would fit that particular person," Gladyshev told BI. "Through measuring proteins, you assess the age of different organs and you say, 'OK, this person is old in this artery.'" For now, there's too much noise in the data to do more. Dr. Pal Pacher, a senior investigator at the National Institute on Alcohol Abuse and Alcoholism who studies organ aging and injuries, told BI that proteomics is simply not ready for clinical use yet. There's just too much noise in the data. But he imagines a future where a more sophisticated protein clock could help link up which people may be most vulnerable to diseases like early cancer, kidney disease, and more. (A California-based proteomics company called Seer announced last weekend that it is partnering with Korea University to study whether proteomics can help more quickly diagnose cancer in young people in their 20s and 30s.) "How beautiful could it be in the future?" Maier said. "Instead of three hours of clinical investigation, I would have a tool which guides me much, much better, with more validity towards interventions."