Ancient Egyptian man's genome reveals his society's cross-cultural ties
Though based on a single genome, the findings offer unique insight into the genetic history of ancient Egyptians — a difficult task considering that Egypt's hot climate is not conducive to DNA preservation.
The researchers extracted DNA from the roots of two teeth, part of the man's skeletal remains that had been interred for millennia inside a large sealed ceramic vessel in a rock-cut tomb. They then managed to sequence his whole genome, a first for any person who lived in ancient Egypt.
The man lived about 4,500-4,800 years ago, the researchers said, about the beginning of a period of prosperity and stability called the Old Kingdom, known for the construction of immense pyramids as monumental pharaonic tombs.
The ceramic vessel was excavated in 1902 at a site called Nuwayrat near the village of Beni Hassan, about 270km south of Cairo. The researchers said the man was about 60 years old when he died and aspects of his skeletal remains hinted at the possibility that he had worked as a potter.
The DNA showed the man descended mostly from local populations, with about 80% of his ancestry traced to Egypt or adjacent parts of North Africa. But about 20% of his ancestry was traced to a region of the ancient Near East called the Fertile Crescent that included Mesopotamia.
'This suggests substantial genetic connections between ancient Egypt and the eastern Fertile Crescent,' said population geneticist Adeline Morez Jacobs of Liverpool John Moores University in England and the Francis Crick Institute in London, lead author of the study published on Wednesday in the journal Nature.
The findings build on the archaeological evidence of trade and cultural exchanges between ancient Egypt and Mesopotamia, a region spanning modern-day Iraq and parts of Iran and Syria.
During the third millennium BCE, Egypt and Mesopotamia were at the vanguard of human civilisation, with achievements in writing, architecture, art, religion and technology.
Egypt showed cultural connections with Mesopotamia, based on some shared artistic motifs, architecture and imports such as lapis lazuli, the blue semi-precious stone, the researchers said.
The pottery wheel from Mesopotamia first appeared in Egypt at about the time the man lived, a period when the earliest pyramids began to spring up near modern-day Cairo, starting with the Step Pyramid of the pharaoh Djoser at Saqqara and later the Great Pyramid of the pharaoh Khufu at Giza.
About 90% of the man's skeleton was preserved. He stood about 1.59m tall, with a slender build. He also had conditions consistent with older age such as osteoporosis and osteoarthritis, as well as a large unhealed abscess from tooth infection.
'Ancient DNA recovery from Egyptian remains has been exceptionally challenging due to Egypt's hot climate that accelerates DNA degradation, with high temperatures breaking down genetic material over time compared with cooler, more stable environments,' Francis Crick Institute population geneticist and study co-author Pontus Skoglund said.
'In this case, the individual's burial in a ceramic pot vessel within a rock-cut tomb probably contributed to the unusual DNA preservation for the region,' Skoglund added.
That his burial occurred before mummification became standard practice in Egypt may have helped avoid DNA degradation because his remains were spared elaborate preservation techniques.
Scientists have struggled to recover ancient Egyptian genomes, according to paleogeneticist and study co-author Linus Girdland Flink of the University of Aberdeen in Scotland. One previous effort yielded partial genome sequencing of three individuals who lived about 1,500 years after the Nuwayrat man.
Given the track record, the researchers were surprised with their success in sequencing the man's genome.
'Yeah, it was a long shot,' Skoglund said.
The man may have worked as a potter or in a trade with similar movements because his bones had muscle markings from sitting for long periods with outstretched limbs.
'All indicators are consistent with movements and positions of a potter, as indicated in ancient Egyptian imagery,' said bioarcheologist and study co-author Joel Irish. 'He would have been of high status to have been buried in a rock-cut tomb. This conflicts with his hard physical life and conjecture that he was a potter, which would ordinarily have been working class. Perhaps he was an excellent potter.'
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TimesLIVE
03-07-2025
- TimesLIVE
Ancient Egyptian man's genome reveals his society's cross-cultural ties
DNA obtained from the remains of a man who lived in ancient Egypt about the time the first pyramids were built is providing evidence of the ties between two great cultures of the period, with a fifth of his genetic ancestry traced to Mesopotamia. Though based on a single genome, the findings offer unique insight into the genetic history of ancient Egyptians — a difficult task considering that Egypt's hot climate is not conducive to DNA preservation. The researchers extracted DNA from the roots of two teeth, part of the man's skeletal remains that had been interred for millennia inside a large sealed ceramic vessel in a rock-cut tomb. They then managed to sequence his whole genome, a first for any person who lived in ancient Egypt. The man lived about 4,500-4,800 years ago, the researchers said, about the beginning of a period of prosperity and stability called the Old Kingdom, known for the construction of immense pyramids as monumental pharaonic tombs. The ceramic vessel was excavated in 1902 at a site called Nuwayrat near the village of Beni Hassan, about 270km south of Cairo. The researchers said the man was about 60 years old when he died and aspects of his skeletal remains hinted at the possibility that he had worked as a potter. The DNA showed the man descended mostly from local populations, with about 80% of his ancestry traced to Egypt or adjacent parts of North Africa. But about 20% of his ancestry was traced to a region of the ancient Near East called the Fertile Crescent that included Mesopotamia. 'This suggests substantial genetic connections between ancient Egypt and the eastern Fertile Crescent,' said population geneticist Adeline Morez Jacobs of Liverpool John Moores University in England and the Francis Crick Institute in London, lead author of the study published on Wednesday in the journal Nature. The findings build on the archaeological evidence of trade and cultural exchanges between ancient Egypt and Mesopotamia, a region spanning modern-day Iraq and parts of Iran and Syria. During the third millennium BCE, Egypt and Mesopotamia were at the vanguard of human civilisation, with achievements in writing, architecture, art, religion and technology. Egypt showed cultural connections with Mesopotamia, based on some shared artistic motifs, architecture and imports such as lapis lazuli, the blue semi-precious stone, the researchers said. The pottery wheel from Mesopotamia first appeared in Egypt at about the time the man lived, a period when the earliest pyramids began to spring up near modern-day Cairo, starting with the Step Pyramid of the pharaoh Djoser at Saqqara and later the Great Pyramid of the pharaoh Khufu at Giza. About 90% of the man's skeleton was preserved. He stood about 1.59m tall, with a slender build. He also had conditions consistent with older age such as osteoporosis and osteoarthritis, as well as a large unhealed abscess from tooth infection. 'Ancient DNA recovery from Egyptian remains has been exceptionally challenging due to Egypt's hot climate that accelerates DNA degradation, with high temperatures breaking down genetic material over time compared with cooler, more stable environments,' Francis Crick Institute population geneticist and study co-author Pontus Skoglund said. 'In this case, the individual's burial in a ceramic pot vessel within a rock-cut tomb probably contributed to the unusual DNA preservation for the region,' Skoglund added. That his burial occurred before mummification became standard practice in Egypt may have helped avoid DNA degradation because his remains were spared elaborate preservation techniques. Scientists have struggled to recover ancient Egyptian genomes, according to paleogeneticist and study co-author Linus Girdland Flink of the University of Aberdeen in Scotland. One previous effort yielded partial genome sequencing of three individuals who lived about 1,500 years after the Nuwayrat man. Given the track record, the researchers were surprised with their success in sequencing the man's genome. 'Yeah, it was a long shot,' Skoglund said. The man may have worked as a potter or in a trade with similar movements because his bones had muscle markings from sitting for long periods with outstretched limbs. 'All indicators are consistent with movements and positions of a potter, as indicated in ancient Egyptian imagery,' said bioarcheologist and study co-author Joel Irish. 'He would have been of high status to have been buried in a rock-cut tomb. This conflicts with his hard physical life and conjecture that he was a potter, which would ordinarily have been working class. Perhaps he was an excellent potter.'

IOL News
25-06-2025
- IOL News
Re-inventing the wheel? Computer simulations reveal its unlikely birth 6 000 years ago
The assumption was that the wheel evolved from wooden rollers. Image: File Kai James Imagine you're a copper miner in southeastern Europe in the year 3900 BCE. Day after day you haul copper ore through the mine's sweltering tunnels. You've resigned yourself to the grueling monotony of mining life. Then one afternoon, you witness a fellow worker doing something remarkable. With an odd-looking contraption, he casually transports the equivalent of three times his body weight on a single trip. As he returns to the mine to fetch another load, it suddenly dawns on you that your chosen profession is about to get far less taxing and much more lucrative. What you don't realize: You're witnessing something that will change the course of history – not just for your tiny mining community, but for all of humanity. Despite the wheel's immeasurable impact, no one is certain as to who invented it, or when and where it was first conceived. The hypothetical scenario described above is based on a 2015 theory that miners in the Carpathian Mountains – in present-day Hungary – first invented the wheel nearly 6 000 years ago as a means to transport copper ore. The theory is supported by the discovery of more than 150 miniaturized wagons by archaeologists working in the region. These pint-sized, four-wheeled models were made from clay, and their outer surfaces were engraved with a wickerwork pattern reminiscent of the basketry used by mining communities at the time. Carbon dating later revealed that these wagons are the earliest known depictions of wheeled transport to date. This theory also raises a question of particular interest to me, an aerospace engineer who studies the science of engineering design. How did an obscure, scientifically naive mining society discover the wheel, when highly advanced civilizations, such as the ancient Egyptians, did not? Video Player is loading. Play Video Play Unmute Current Time 0:00 / Duration -:- Loaded : 0% Stream Type LIVE Seek to live, currently behind live LIVE Remaining Time - 0:00 This is a modal window. Beginning of dialog window. Escape will cancel and close the window. Text Color White Black Red Green Blue Yellow Magenta Cyan Transparency Opaque Semi-Transparent Background Color Black White Red Green Blue Yellow Magenta Cyan Transparency Opaque Semi-Transparent Transparent Window Color Black White Red Green Blue Yellow Magenta Cyan Transparency Transparent Semi-Transparent Opaque Font Size 50% 75% 100% 125% 150% 175% 200% 300% 400% Text Edge Style None Raised Depressed Uniform Dropshadow Font Family Proportional Sans-Serif Monospace Sans-Serif Proportional Serif Monospace Serif Casual Script Small Caps Reset restore all settings to the default values Done Close Modal Dialog End of dialog window. Advertisement Video Player is loading. 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Next Stay Close ✕ An illustration of what the original mine carts used in the Carpathian mountains may have looked like in 3900 BCE. Image: Kai James via DALL·E A controversial idea It has long been assumed that wheels evolved from simple wooden rollers. But until recently no one could explain how or why this transformation took place. What's more, beginning in the 1960s, some researchers started to express strong doubts about the roller-to-wheel theory. After all, for rollers to be useful, they require flat, firm terrain and a path free of inclines and sharp curves. Furthermore, once the cart passes them, used rollers need to be continually brought around to the front of the line to keep the cargo moving. For all these reasons, the ancient world used rollers sparingly. According to the skeptics, rollers were too rare and too impractical to have been the starting point for the evolution of the wheel. But a mine – with its enclosed, human-made passageways – would have provided favorable conditions for rollers. This factor, among others, compelled my team to revisit the roller hypothesis. Key stages in the evolution of the first wheels, beginning from simple rollers and eventually arriving at a wheel-and-axle structure in which a slender axle is connected to large solid discs, or wheels, on both ends. Image: Kai James A turning point The transition from rollers to wheels requires two key innovations. The first is a modification of the cart that carries the cargo. The cart's base must be outfitted with semicircular sockets, which hold the rollers in place. This way, as the operator pulls the cart, the rollers are pulled along with it. This innovation may have been motivated by the confined nature of the mine environment, where having to periodically carry used rollers back around to the front of the cart would have been especially onerous. The discovery of socketed rollers represented a turning point in the evolution of the wheel and paved the way for the second and most important innovation. This next step involved a change to the rollers themselves. To understand how and why this change occurred, we turned to physics and computer-aided engineering. A computer simulation of the evolution from a roller to a wheel-and-axle structure. Each image represents a design evaluated by the algorithm. The search ultimately converges upon the familiar wheel-and-axle design. Image: Kai James Simulating the wheel's evolution To begin our investigation, we created a computer programme designed to simulate the evolution from a roller to a wheel. Our hypothesis was that this transformation was driven by a phenomenon called 'mechanical advantage.' This same principle allows pliers to amplify a user's grip strength by providing added leverage. Similarly, if we could modify the shape of the roller to generate mechanical advantage, this would amplify the user's pushing force, making it easier to advance the cart. Our algorithm worked by modeling hundreds of potential roller shapes and evaluating how each one performed, both in terms of mechanical advantage and structural strength. The latter was used to determine whether a given roller would break under the weight of the cargo. As predicted, the algorithm ultimately converged upon the familiar wheel-and-axle shape, which it determined to be optimal. During the execution of the algorithm, each new design performed slightly better than its predecessor. We believe a similar evolutionary process played out with the miners 6 000 years ago. It is unclear what initially prompted the miners to explore alternative roller shapes. One possibility is that friction at the roller-socket interface caused the surrounding wood to wear away, leading to a slight narrowing of the roller at the point of contact. Another theory is that the miners began thinning out the rollers so that their carts could pass over small obstructions on the ground. Either way, thanks to mechanical advantage, this narrowing of the axle region made the carts easier to push. As time passed, better-performing designs were repeatedly favored over the others, and new rollers were crafted to mimic these top performers. Consequently, the rollers became more and more narrow, until all that remained was a slender bar capped on both ends by large discs. This rudimentary structure marks the birth of what we now refer to as 'the wheel.'


Daily Maverick
03-06-2025
- Daily Maverick
Light is the science of the future — how Africans are using it to solve local challenges
Photonics is regarded as the science of the future and students and academics on the continent are making great strides in finding applications to address Africa's needs. Light is all around us, essential for one of our primary senses (sight) as well as life on Earth itself. It underpins many technologies that affect our daily lives, including energy harvesting with solar cells, light-emitting diode (LED) displays and telecommunications through fibre optic networks. The smartphone is a great example of the power of light. Inside the box, its electronic functionality works because of quantum mechanics. The front screen is an entirely photonic device: liquid crystals controlling light. The back of the phone too: white light-emitting diodes for a flash, and lenses to capture images. We use the word photonics, and sometimes optics, to capture the harnessing of light for new applications and technologies. Their importance in modern life is celebrated every year on 16 May with the International Day of Light. Despite the resource constraints under which they work, scientists on the African continent have made notable contributions to photonics research. Some of their research has been captured in a recent special issue of the journal Applied Optics. Along with colleagues in this field from Morocco and Senegal, we introduced this collection of papers, which aims to celebrate excellence and show the impact of studies that address continental issues. A spotlight on photonics in Africa Africa's history in formal optics goes back thousands of years, and references to lens design were already recorded in ancient Egyptian writings. In more recent times Africa has contributed to two Nobel prizes based on optics. Egyptian-born Ahmed Zewail watched the ultrafast processes in chemistry with lasers (1999, Nobel Prize for Chemistry) and Moroccan-born Serge Harouche studied the behaviour of individual particles of light, or photons (2012, Nobel Prize for Physics). Unfortunately, the African optics story is one of pockets of excellence. The highlights are as good as anywhere else, but there are too few of them to put the continent on the global optics map. According to a 2020 calculation done for us by the Optical Society of America, based on its journals, Africa contributes less than 1% to worldwide journal publications with optics or photonics as a theme. Yet there are great opportunities for meeting continental challenges using optics. Examples of areas where Africans can innovate are: Bridging the digital divide with modern communications infrastructure; Optical imaging and spectroscopy for improvements in agriculture and monitoring climate changes; Harnessing the sun with optical materials to produce clean energy; Bio-photonics to solve health issues; and Quantum technologies for novel forms of communicating, sensing, imaging and computing. The papers in the special journal issue touch on a diversity of continent-relevant topics. One is on using optics to communicate across free-space (air) even in bad weather conditions. This light-based solution was tested using weather data from two African cities, Alexandria in Egypt and Setif in Algeria. Another paper is about tiny quantum sources of quantum entanglement for sensing. The authors used diamonds, gems found in South Africa and more commonly associated with jewellery. Diamonds have many flaws, one of which can produce single photons as an output when excited. The single photon output was split into two paths, as if the particle went both left and right at the same time. This is the quirky notion of entanglement, in this case, created with diamonds. If an object is placed in any one path, the entanglement can detect it. Strangely, sometimes the photons take the left path but the object is in fact in the right path, yet still it can be detected. One contributor proposes a cost-effective method to detect and classify harmful bacteria in water. New approaches in spectroscopy (studying colour) for detecting cell health; biosensors to monitor salt and glucose levels in blood; and optical tools for food security all play their part in optical applications on the African continent. Another area of African optics research that has important applications is the use of optical fibres for sensing the quality of soil and its structural integrity. Optical fibres are usually associated with communication, but a modern trend is to use the optical fibre already laid to sense for small changes in the environment, for instance, as early warning systems for earthquakes. The research shows that conventional fibre can also be used to tell if soil is degrading, either from lack of moisture or some physical shift in structure (weakness or movement). It is an immediately useful tool for agriculture, building on many decades of research. The diverse range of topics in the collection shows how creative researchers on the continent are in using limited resources for maximum impact. The high orientation towards applications is probably also a sign that African governments want their scientists to work on solutions to real problems rather than purely academic questions. A case in point is South Africa, which has a funded national strategy (SA QuTI) to turn quantum science into quantum technology and train the workforce for a new economy. Towards a brighter future For young science students wishing to enter the field, the opportunities are endless. Although photonics has no discipline boundaries, most students enter through the fields of physics, engineering, chemistry or the life sciences. Its power lies in the combination of skills, blending theoretical, computational and experimental, that are brought to bear on problems. At a typical photonics conference there are likely to be many more industry participants than academics. That's a testament to its universal impact in new technologies and the employment opportunities for students. The previous century was based on electronics and controlling electrons. This century will be dominated by photonics, controlling photons. DM First published by The Conversation. Andrew Forbes is a professor at the University of the Witwatersrand. DM Patience Mthunzi-Kufa is a distinguished professor at the University of South Africa. Professor Zouheir Sekkat of Mohammed V University in Rabat, who is the director of the Pole of Optics and Photonics in the Moroccan Institute for Advanced Science, Innovation and Research at Mohamed VI Polytechnic University in Benguerir, Morocco, contributed to this article. This story first appeared in our weekly Daily Maverick 168 newspaper, which is available countrywide for R35.